Abstract for Applied Data Science talk [i0ds2]

TITLE:

Transcriptome Mining:
Tackling core issues related to gene regulation
& also analyzing the "data exhaust" associated with this activity

In this seminar, I will discuss issues in transcriptome analysis. I
will first talk about some core aspects - how we analyze the activity
patterns of genes in model organisms and humans. I will focus on how
we cluster these patterns together, finding conserved modules across
diverse species, and then, how we analyze the regulation of these
modules, determining whether their dynamics is driven solely
internally or involves an external agent. In the second half of the
talk, I will look at the "data exhaust" from transcriptome analysis -
that is, how one can find additional things from this data than what
is necessarily intended. First, I will focus on genomic privacy: How
looking at the quantifications of expression levels can potentially
reveal something about the subjects studied, and how one can take
steps to protect patient anonymity. Next, I will look at how the
social activity of researchers generating transcriptome datasets
in itself creates revealing patterns in the scientific literature.

http://papers.gersteinlab.org/papers/dreiss
http://papers.gersteinlab.org/papers/orthoclust
http://papers.gersteinlab.org/papers/privaseq

Indian Country Books - Winter reading special

 

Winter Reading Special for Indian Country. Reading is essential to expanding ones world view.

Indian Country books has developed the most comprehensive catalog of close to 10,000 tiles all searchable by category, title, author, grade level (where available) ISBN key word

www.indiancountrybooks.com 

Please look at our catalog for your schools Spring semester as well as Holiday gift giving.  

We are offering a 25% educators discount for any prepaid CC order on Paypal enter (ICB25) in the shopping cart check out.

 

You may also look at www.nativemedianetwork.com  our Media Platform btoadcvasting 24/7 to Indian Country at www.ndn1.com.

FACEBOOK PAGE:  Native Media Network

 

Have a great Winter period.

 

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Re: Title for HGVS talk

Abstract for
HGVS presentation - 17th October, Orlando, Fl

My talk will focus on prioritizing genetic variants associated with
cancer, to identify key variants driving cancer progression. First, I
will look at the overall functional impact of the variants in cancer
genomes, ranking them in terms of impact, for both coding and
non-coding regions. For the coding analysis, we use the ALoFT and
frustration tools, and for the noncoding analysis, we use FunSeq.
Then, I will look at the recurrence of variants within cancer cohorts.
Here we develop two approaches: one parametric (LARVA) and the other
non-parametric (MOAT). Finally, I will put these methods together
through application to kidney and prostate cancers.

http://events.hgvs.org/
9:00 - 9:40
10/17

==
i0hgvs

★ Knowing Foundation would like your help with Native American Cultural Literacy Program

 

Knowing Foundation Needs a little help from a friend Hello Dear Friend, There are times in everyone's life when a caring friend makes all the difference. Now could be one of those times. Knowing Foundation thought you could help with a fundraising campaign and asked us to tell you about it. Here's the campaign: Native American Cultural Literacy Program by Knowing Foundation $100 raised · $36,000 goal The Knowing Foundation provides support for Native American literacy and cultural programs for distribution through Native Media Network, a 24/7 media platform broadcasting, and archiving and communicating to Indian Country. ... View campaign   Share the campaign Make a contribution Not interested in this campaign? Opt out of further emails.

 

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Abstract for talk at UMass [i0umass17]

Transcriptome Analysis:

Tackling core issues related to regulation & also mining the "data
exhaust" of this activity

In this seminar, I will discuss issues in transcriptome analysis. I
will first talk about core aspects - how we analyze the activity
patterns of genes in model organisms and humans. I will focus on how
we cluster these patterns together, finding conserved modules across
species, and then, how we analyze the regulation of these modules,
whether their dynamics is determined internally or involves an
external control. Finally, I will talk about how one can decompose
this regulation into simple logic gates, such as those seen in
electronic circuits (e.g., and/or), and how one finds a different type
of gate in the natural functioning of cells than in the dis-regulated
activity evident in cancer. In the second half of the talk, I will
look at some of the data exhaust from transcriptome analysis. That is,
how one can find additional things from this data than what is necessarily
intended. I will focus on genomic privacy: How looking at
the quantifications of expression levels can potentially reveal
something about the subjects studied, and how one can take steps to
protect patient anonymity.

http://papers.gersteinlab.org/papers/dreiss
http://papers.gersteinlab.org/papers/orthoclust
http://papers.gersteinlab.org/papers/privaseq
http://papers.gersteinlab.org/papers/loregic

Honoring for PAUL ORTEGA - Broadcast Live

 

 

 

SAVE THE DATE - LIVE BROADCAST HONORING FOR PAUL ORTEGA 

We would like to invite you a Live broadcast honoring PAUL ORTEGA from the Pueblo Culture Center in Albuquerque on Saturday June 24^th.  11:00 am - 2:00pm 

Log into  www.nativemedianetwork.com on your smart phone or any web enabled device to participate.
Numerous Native Elders, Musicians, and spokes people will be present to say farewell to a special individual that helped his people and brought the Native voice to the world through his songs.

The event will be emceed by Boye Ladd.

His daughter Katrina has said this about her Father on this Father's Day.

A. Paul Ortega walked this earth for 79 years. He was born on August 26, 1937 and peacefully went home to the "Happy Hunting Grounds" on May 17, 2017.

Paul was known around the world as a musician who paved the way for many Native American Performing Artists. To others he was a healer and teacher through being a Medicine Man for the Mescalero Apache Tribe. To the tribal people he was also a leader serving on the tribal council, as Vice President, and President, always doing for the tribal members. Paul led an amazing life always making a mark and touching lives. Among these many things he was a loving husband, father, grandfather, uncle, brother, son, and friend.

We invite you all to join us on Saturday, June 24^th 11 am - 2 pm at the Indian Pueblo Cultural Center to celebrate Paul's life and pay tribute to his legacy that will live forever.

We would like to dedicate a tribute to the musicasl legacy he has left behind

 

For a musical tribute to Paul listen to:

https://www.youtube.com/watch?v=aXGHBf8itHw&list=PL905BB1DB844154C6

 

 

Harmon

www.nativemedianetwork.com    tell you friends to join us. 

Like us on Facebook ndn1 Native Media Nedianetwork

 

 

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Indian Country Books - Summer reading special

 

Summer Reading Special for Indian Country. Reading is essential to expanding ones world view.

Indian Country books has developed the most comprehensive catalog of close to 10,000 tiles all searchable by category, title, author, grade level (where available) ISBN key word

 

Please take a look at www.indiancountrybooks.com  We are offering a 25% educators discount for any and all titles enter (ICB25) in the shopping cart check out.

 

You may also look at www.nativemedianetwork.com  an on-line Native broadcast station.

Have a great Summer.

 

Unsubscribe

RE: Abstract for talk at LabRoots 2017 Genetics and Genomics Event (i0labroots17)

Thank you Mark!

Best,
Tracy

Director of Production, LabRoots
Tracy Salcido | Tracy.Salcido@LabRoots.com
Office 714.930.3518 



-----Original Message-----
From: Mark Gerstein [mailto:mark@gersteinlab.org]
Sent: Friday, May 05, 2017 10:24 AM
To: Tracy Salcido <tracy.salcido@labroots.com>; Tiffany McGladdery <tiffany.mcgladdery@labroots.com>
Cc: glabstracts.mbglab@blogger.com
Subject: Abstract for talk at LabRoots 2017 Genetics and Genomics Event (i0labroots17)

Transcriptome Analysis:

Tackling core issues related to regulation & also mining the "data exhaust" of this activity

In this seminar, I will discuss issues in transcriptome analysis. I will first talk about core aspects - how we analyze the activity patterns of genes in model organisms and humans. I will focus on how we cluster these patterns together, finding conserved modules across species, and then, how we analyze the regulation of these modules, whether their dynamics is determined internally or involves an external control. Finally, I will talk about how one can decompose this regulation into simple logic gates, such as those seen in electronic circuits (e.g., and/or), and how one finds a different type of gate in the natural functioning of cells than in the dis-regulated activity evident in cancer. In the second half of the talk, I will look at some of the data exhaust from transcriptome analysis. That is, how one can find additional things from this data than what is necessarily intended. I will focus on genomic privacy: How looking at the quantifications of expression levels can potentially reveal something about the subjects studied, and how one can take steps to protect patient anonymity.

http://papers.gersteinlab.org/papers/dreiss
http://papers.gersteinlab.org/papers/orthoclust
http://papers.gersteinlab.org/papers/privaseq
http://papers.gersteinlab.org/papers/loregic

Abstract for talk at LabRoots 2017 Genetics and Genomics Event (i0labroots17)

Transcriptome Analysis:

Tackling core issues related to regulation & also mining the "data
exhaust" of this activity

In this seminar, I will discuss issues in transcriptome analysis. I
will first talk about core aspects - how we analyze the activity
patterns of genes in model organisms and humans. I will focus on how
we cluster these patterns together, finding conserved modules across
species, and then, how we analyze the regulation of these modules,
whether their dynamics is determined internally or involves an
external control. Finally, I will talk about how one can decompose
this regulation into simple logic gates, such as those seen in
electronic circuits (e.g., and/or), and how one finds a different type
of gate in the natural functioning of cells than in the dis-regulated
activity evident in cancer. In the second half of the talk, I will
look at some of the data exhaust from transcriptome analysis. That is,
how one can find additional things from this data than what is
necessarily intended. I will focus on genomic privacy: How looking at
the quantifications of expression levels can potentially reveal
something about the subjects studied, and how one can take steps to
protect patient anonymity.

http://papers.gersteinlab.org/papers/dreiss
http://papers.gersteinlab.org/papers/orthoclust
http://papers.gersteinlab.org/papers/privaseq
http://papers.gersteinlab.org/papers/loregic

NJOM 2017 Conference

 

We are pleased to invite you to the 2017 National Johnson O'Malley Conference in Albuquerque, NM this week April 26 - 28

Native Media Network will be exhibiting its media Platform incorporating broadcasting www.NDN1.com,  On Demand Archives and its Catalog of close to 10,000 Native American book titles www.indiancountrybooks.com  Please log in and use our search engine to find books by subject area, Tribal affiliation, Author, Title, ISBN. We are offering a JOM discount of 25% for any orders placed by August 30^th for your organization or school system. (Enter code (FOF25) in the shopping cart checkout page. PO's and credit cards accepted. 
If you have any questions please give us a call at 505-989-9590 or email info@indiancountrybooks.com

Thank you 
Harmon Houghton, Program Director
       
www.IndianCountryBooks.com
www.NativeMediaNetwork.com

 

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Must Read for Indigenous Communication - A Time Before Deception

 

 A TIME BEFORE DECEPTION:
Truth in Communication, Culture, and Ethics

 

By Thomas W. Cooper
Foreword by Dr. Fox Tree
Epilogue by Chief Oren Lyons

Pages:  224  (19) photographs
ISBN:  978-0940666597 (cloth) $24.95
ISBN:  978- 0940666894 (paper) $14.95

"Here is a treasure of knowledge, insight, and especially inspiration for all who have an interest in ethical, 'authentic' communication, beyond the Native American cultures which provide both context and model...a call to learn from Indigenous Peoples...a journey of the heart as well as the mind."
--Professor David L. Smith   Emmy award winning PBS Producer

 

IN THIS AGE OF LIES IT'S COMFORTING TO KNOW THERE WAS A TIME OF TRUTH

In his ground breaking exploration of the forms, meanings, and ethics of Indigenous communication, Cooper presents evidence that Native cultures may have originated from higher--not more "primitive"--civilizations.  Looking beneath the surface of tribal communication, Cooper describes practices of tribal cultures worldwide and examines more specifically the communication ethic of the Dine (Navajo) of northern Arizona and the Shuswap people of British Columbia, with both of whom he lived for several months.  What he finds is the deeper significance of communication for these early Americans: it is at once the embodiment of truth, the expression of gratitude to the Creator, and the vehicle for maintaining harmony with the natural world. 

Please look at our On-Line catalog of close to 10,000 titles at www.indiancountrybooks.com

 

Log into www.nativemedianetwork.com
24/7 uninterrupted Live TV "All Indian All the Time" Programing

                                                            

 

Email info@nativemedianetwork.com

 

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Woman's march in Santa Fe NM

 

 

Dear Friends & Supporters:

 

Native Media Network is an advocate of Native and Women's rights please explore our platform  www.nativemedianetwork.com and tune in to our broadcast station for 24/7 programing www.ndn1.com  view our cat6alog of over 10,000 Native American Book titles www.indiancountrybooks

 

 

Native Media Network had the honor and privilege to be able to  video the Woman's March rally in Santa Fe and have posted it in our archives http://www.nativemedianetwork.com/media-archive/

Please feel free to forward the link to your friends and Facebook pages.

 

 

Thank you

Harmon Houghton, Program Director

Native Media Network

Feminine Media Network